About Kaptive

Kaptive is a tool for Klebsiella locus typing and variant evaluation. It takes one or more pre-assembled genomes and for each finds the best matching locus from a reference database. References for known K-loci (capsule) and O-loci (lipopolysaccharide) are available in Kaptive's web interface.

Citation

Wyres KL, Wick RR, Gorrie C, Jenney A, Follador R, Thomson NR and Holt KE 2016.
Identification of Klebsiella capsule synthesis loci from whole genome data. Microbial Genomics doi: 10.1099/mgen.0.000102







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Kaptive on GitHub

Kaptive is an open source project for the biomedical community, licensed under GNU General Public License version 3.

Kaptive is developed and maintained by Kelly Wyres, Ryan Wick and Kathryn Holt at the Holt Lab in the Bio21 Molecular Science & Biotechnology Institute.

The command line version of Kaptive can be deployed on your computer with Klebsiella K-locus, O-locus or other databases.

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